Fixes some bugs preventing servers from starting

src/main/java/net/knarcraft/minecraftserverlauncher/Main.java

@@ -83,7 +83,7 @@ public class Main {
                 Server server = collection.getServer();
                 if (server.isEnabled() && server.getProcess() != null) {
                     try {
-                        String readText = server.read();
+                        String readText = server.readFromServer();
                         if (!readText.equals("")) {
                             collection.getServerConsole().output(readText);
                             updatePlayerList(readText, server);
@@ -117,7 +117,8 @@ public class Main {
     private static boolean serversRunning() {
         int num = 0;
         for (Collection collection : Profile.getCurrent().getCollections()) {
-            if (collection.getServer().isStarted() || (collection.getServer().getProcess() != null && collection.getServer().getProcess().isAlive())) {
+            if (collection.getServer().isStarted() ||
+                    (collection.getServer().getProcess() != null && collection.getServer().getProcess().isAlive())) {
                 num++;
             }
         }

src/main/java/net/knarcraft/minecraftserverlauncher/server/Server.java

@@ -48,6 +48,11 @@ public class Server {
     private final String bungeeVersion;
     private boolean started;
 
+    /**
+     * Initializes a new server with default values
+     *
+     * @param name <p>The name of the server</p>
+     */
     public Server(String name) {
         this.name = name;
         this.path = "";
@@ -65,6 +70,20 @@ public class Server {
         this.bungeeVersion = "";
     }
 
+    /**
+     * Initializes a server with the given values
+     *
+     * @param name <p>The name of the server</p>
+     * @param path <p>The file path of the folder containing the server files</p>
+     * @param enabled <p>Whether the server is enabled to start the next time servers are started</p>
+     * @param typeName <p>The name of the server type currently in use on the server</p>
+     * @param serverVersion <p>The currently selected server version for the given server type</p>
+     * @param maxRam <p>The maximum amount of ram the server is allowed to use</p>
+     * @param vanillaVersion <p>The version of the "latest" downloaded vanilla version</p>
+     * @param snapshotVersion <p>The version of the "latest" downloaded snapshot version</p>
+     * @param spongeVanillaVersion <p>The version of the "latest" SpongeVanilla jar downloaded</p>
+     * @param bungeeVersion <p>The version of the "latest" bungee jar downloaded</p>
+     */
     public Server(String name, String path, boolean enabled, String typeName, String serverVersion, String maxRam,
             String vanillaVersion, String snapshotVersion, String spongeVanillaVersion, String bungeeVersion) {
         this.name = name;
@@ -80,18 +99,38 @@ public class Server {
         this.playerList = new ArrayList<>();
     }
 
+    /**
+     * Gets the name of the server
+     *
+     * @return <p>The name of the server</p>
+     */
     public String getName() {
         return this.name;
     }
 
+    /**
+     * Whether the server has been started
+     *
+     * @return <p>True if the server has been started. False otherwise</p>
+     */
     public boolean isStarted() {
         return started;
     }
 
+    /**
+     * Gets the name of the server type used by this server
+     *
+     * @return <p>The name of the server type used by this server</p>
+     */
     public String getTypeName() {
         return this.type.getName();
     }
 
+    /**
+     * Gets the version used given server type used
+     *
+     * @return <p>The server version given server type</p>
+     */
     public String getServerVersion() {
         return this.serverVersion;
     }
@@ -255,11 +294,99 @@ public class Server {
     }
 
     /**
-     * Runs the Minecraft server.
+     * Runs a Minecraft server
+     *
+     * @return <p>True if nothing went wrong</p>
      */
     private boolean run() {
-        if (this.enabled) {
+        if (!this.enabled) {
+            this.started = false;
+            return true;
+        }
         this.started = true;
+        if (!initializeJarDownload() || !delayStartup()) {
+            return false;
+        }
+
+        try {
+            startServerProcess();
+            Profile.getGUI().setStatus("Servers are running");
+            this.started = true;
+            return true;
+        } catch (IOException e) {
+            Profile.getGUI().setStatus("Could not start server");
+            this.started = false;
+            return false;
+        }
+    }
+
+    /**
+     * Reads all available output from the server process
+     *
+     * @return <p>The server output</p>
+     * @throws IOException <p>If reading from the reader fails</p>
+     */
+    public String readFromServer() throws IOException {
+        String line;
+        StringBuilder text = new StringBuilder();
+        while (reader.ready() && (line = reader.readLine()) != null) {
+            text.append(line).append("\n");
+        }
+        return text.toString().trim();
+    }
+
+    /**
+     * Starts the process running this server
+     *
+     * @throws IOException <p>If the process cannot be started</p>
+     */
+    private void startServerProcess() throws IOException {
+        ProcessBuilder builder;
+        String serverPath;
+        String serverFile;
+        if (type.getName().equals("Custom")) {
+            serverFile = serverVersion;
+        } else {
+            serverFile = this.type.getName() + serverVersion + ".jar";
+        }
+        if (Profile.getCurrent().getDownloadAllAvailableJARFiles() && !type.getName().equals("Custom")) {
+            serverPath = jarDirectory + serverFile;
+        } else {
+            serverPath = this.path + File.separator + serverFile;
+        }
+        builder = new ProcessBuilder("java", "-Xmx" + this.maxRam, "-Xms512M",
+                "-Djline.terminal=jline.UnsupportedTerminal", "-Dcom.mojang.eula.agree=true", "-jar", serverPath,
+                "nogui");
+        builder.directory(new File(this.path));
+        builder.redirectErrorStream(true);
+        this.process = builder.start();
+        this.writer = new BufferedWriter(new OutputStreamWriter(this.process.getOutputStream()));
+        this.reader = new BufferedReader(new InputStreamReader(this.process.getInputStream()));
+    }
+
+    /**
+     * Delays the server's startup for the given amount of time
+     *
+     * @return <p>True if the delay was successful</p>
+     */
+    private boolean delayStartup() {
+        try {
+            Profile.getGUI().setStatus("Delaying startup");
+            TimeUnit.SECONDS.sleep(Profile.getCurrent().getDelayStartup());
+            return true;
+        } catch (InterruptedException e) {
+            e.printStackTrace();
+            this.started = false;
+            return false;
+        }
+    }
+
+    /**
+     * Starts downloading the necessary .jar file
+     *
+     * @return <p>True if nothing went wrong</p>
+     */
+    private boolean initializeJarDownload() {
         if (!Profile.getCurrent().getDownloadAllAvailableJARFiles()) {
             try {
                 Profile.getGUI().setStatus("Downloading jar...");
@@ -273,71 +400,13 @@ public class Server {
                 return false;
             }
         }
-            try {
-                Profile.getGUI().setStatus("Delaying startup");
-                TimeUnit.SECONDS.sleep(Profile.getCurrent().getDelayStartup());
-            } catch (InterruptedException e) {
-                e.printStackTrace();
-                this.started = false;
-                return false;
-            }
-            try {
-                ProcessBuilder builder;
-                String serverPath;
-                if (Profile.getCurrent().getDownloadAllAvailableJARFiles() && !type.getName().equals("Custom")) {
-                    serverPath = jarDirectory + this.getType();
-                } else {
-                    serverPath = this.path + File.separator + this.getType();
-                }
-                builder = new ProcessBuilder(
-                        "java",
-                        "-Xmx" + this.maxRam,
-                        "-Xms512M",
-                        "-Djline.terminal=jline.UnsupportedTerminal",
-                        "-Dcom.mojang.eula.agree=true",
-                        "-jar",
-                        serverPath,
-                        "nogui"
-                );
-                builder.directory(new File(this.path));
-                builder.redirectErrorStream(true);
-                this.process = builder.start();
-                this.writer = new BufferedWriter(new OutputStreamWriter(this.process.getOutputStream()));
-                this.reader = new BufferedReader(new InputStreamReader(this.process.getInputStream()));
-                Profile.getGUI().setStatus("Servers are running");
-                this.started = true;
         return true;
-            } catch (IOException e) {
-                Profile.getGUI().setStatus("Could not start server");
-                this.started = false;
-                return false;
-            }
-        } else {
-            this.started = false;
-            return true;
-        }
-    }
-
-    /**
-     * Reads all available output from the server process.
-     *
-     * @return The server output
-     * @throws IOException If reading from the reader fails
-     */
-    public String read() throws IOException {
-        String line;
-        StringBuilder text = new StringBuilder();
-        while (reader.ready() && (line = reader.readLine()) != null) {
-            text.append(line).append("\n");
-        }
-        return text.toString().trim();
     }
 
     /**
      * Downloads necessary .jar file for the server.
-     * This is unfortunately hardcoded since there is no golden standard, and we only host some jars ourselves.
      *
-     * @throws FileNotFoundException if the file was not found and could not be acquired.
+     * @throws FileNotFoundException <p>If the file was not found and could not be acquired</p>
      */
     private void downloadJar() throws IOException {
         String path = this.path + File.separator;

src/main/java/net/knarcraft/minecraftserverlauncher/server/servertypes/Vanilla.java

@@ -54,7 +54,7 @@ public class Vanilla extends AbstractServerType {
      * Gets the URL to the .jar file for the newest version
      *
      * @return <p>An array containing the latest version and a link to its file</p>
-     * @throws IOException <p>If the remote resource cannot be read</p>
+     * @throws IOException <p>If the remote resource cannot be readFromServer</p>
      */
     private String[] getLatestFile() throws IOException {
         String versionText = readFile(versionURL);
@@ -70,7 +70,7 @@ public class Vanilla extends AbstractServerType {
      *
      * @param versionURL <p>The URL to the version document describing the .jar file</p>
      * @return <p>The URL necessary do download the .jar file</p>
-     * @throws IOException <p>If the remote resource cannot be read</p>
+     * @throws IOException <p>If the remote resource cannot be readFromServer</p>
      */
     private String getVanillaDownloadURL(String versionURL) throws IOException {
         String versionText = readFile(versionURL);

src/main/java/net/knarcraft/minecraftserverlauncher/utility/CommonFunctions.java

@@ -2,7 +2,13 @@ package net.knarcraft.minecraftserverlauncher.utility;
 
 import net.knarcraft.minecraftserverlauncher.userinterface.ServerLauncherGUI;
 
-import java.io.*;
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileNotFoundException;
+import java.io.FileOutputStream;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.OutputStream;
 import java.net.URI;
 import java.net.URISyntaxException;
 import java.net.URL;
@@ -23,7 +29,7 @@ public class CommonFunctions {
     /**
      * Gets a resource as an InputStream
      *
-     * @param resourceName <p>The name of the resource you want to read</p>
+     * @param resourceName <p>The name of the resource you want to readFromServer</p>
      * @return <p>An input stream which can be used to access the resource</p>
      */
     public static InputStream getResourceAsStream(String resourceName) {
@@ -34,8 +40,8 @@ public class CommonFunctions {
     /**
      * Gets a resource as a Scanner
      *
-     * @param resourceName <p>The name of the resource you want to read</p>
-     * @return <p>A scanner which can be used to read contents of the resource</p>
+     * @param resourceName <p>The name of the resource you want to readFromServer</p>
+     * @return <p>A scanner which can be used to readFromServer contents of the resource</p>
      * @throws FileNotFoundException <p>If the resource is not found</p>
      */
     public static Scanner getResourceAsScanner(String resourceName) throws FileNotFoundException {
@@ -67,7 +73,7 @@ public class CommonFunctions {
      *
      * <p>This is used to find the newest version of jars and the software.</p>
      *
-     * @param path <p>The full url of the file to read</p>
+     * @param path <p>The full url of the file to readFromServer</p>
      * @return <p>True if successful. False otherwise</p>
      */
     public static String readFile(String path) throws IOException {
@@ -144,6 +150,7 @@ public class CommonFunctions {
 
     /**
      * Opens an url in the user's default application.
+     *
      * @param url <p>The URL to open</p>
      */
     public static void goToURL(String url) {