Move lots of the subcommands to proper place, let's see if this works.

src/main/java/com/graywolf336/jail/command/CommandHandler.java

@@ -10,14 +10,7 @@ import org.bukkit.entity.Player;
 
 import com.graywolf336.jail.JailMain;
 import com.graywolf336.jail.JailManager;
-import com.graywolf336.jail.command.commands.CellCreateCommand;
 import com.graywolf336.jail.command.commands.HandCuffCommand;
-import com.graywolf336.jail.command.commands.JailCheckCommand;
-import com.graywolf336.jail.command.commands.JailClearCommand;
-import com.graywolf336.jail.command.commands.JailClearForceCommand;
-import com.graywolf336.jail.command.commands.JailCreateCommand;
-import com.graywolf336.jail.command.commands.JailListCellsCommand;
-import com.graywolf336.jail.command.commands.JailRemoveCellCommand;
 import com.graywolf336.jail.command.commands.UnHandCuffCommand;
 import com.graywolf336.jail.command.commands.UnjailCommand;
 import com.graywolf336.jail.enums.LangString;
@@ -143,14 +136,7 @@ public class CommandHandler {
 	
 	/** Loads all the commands into the hashmap. */
 	private void loadCommands() {
-		load(CellCreateCommand.class);
 		load(HandCuffCommand.class);
-		load(JailCheckCommand.class);
-		load(JailClearCommand.class);
-		load(JailClearForceCommand.class);
-		load(JailCreateCommand.class);
-		load(JailListCellsCommand.class);
-		load(JailRemoveCellCommand.class);
 		load(UnHandCuffCommand.class);
 		load(UnjailCommand.class);
 	}

src/main/java/com/graywolf336/jail/command/JailHandler.java

@@ -13,18 +13,32 @@ import com.beust.jcommander.JCommander;
 import com.beust.jcommander.ParameterException;
 import com.graywolf336.jail.JailMain;
 import com.graywolf336.jail.JailManager;
+import com.graywolf336.jail.command.jcommands.CellCreate;
+import com.graywolf336.jail.command.jcommands.Check;
+import com.graywolf336.jail.command.jcommands.Clear;
+import com.graywolf336.jail.command.jcommands.ClearForce;
+import com.graywolf336.jail.command.jcommands.Create;
 import com.graywolf336.jail.command.jcommands.JailFoundation;
 import com.graywolf336.jail.command.jcommands.JailList;
+import com.graywolf336.jail.command.jcommands.ListCells;
 import com.graywolf336.jail.command.jcommands.Mute;
 import com.graywolf336.jail.command.jcommands.Reload;
+import com.graywolf336.jail.command.jcommands.RemoveCell;
 import com.graywolf336.jail.command.jcommands.Stop;
 import com.graywolf336.jail.command.jcommands.TeleIn;
 import com.graywolf336.jail.command.jcommands.TeleOut;
 import com.graywolf336.jail.command.jcommands.Version;
+import com.graywolf336.jail.command.subcommands.JailCellCreateCommand;
+import com.graywolf336.jail.command.subcommands.JailCheckCommand;
+import com.graywolf336.jail.command.subcommands.JailClearCommand;
+import com.graywolf336.jail.command.subcommands.JailClearForceCommand;
 import com.graywolf336.jail.command.subcommands.JailCommand;
+import com.graywolf336.jail.command.subcommands.JailCreateCommand;
+import com.graywolf336.jail.command.subcommands.JailListCellsCommand;
 import com.graywolf336.jail.command.subcommands.JailListCommand;
 import com.graywolf336.jail.command.subcommands.JailMuteCommand;
 import com.graywolf336.jail.command.subcommands.JailReloadCommand;
+import com.graywolf336.jail.command.subcommands.JailRemoveCellCommand;
 import com.graywolf336.jail.command.subcommands.JailStopCommand;
 import com.graywolf336.jail.command.subcommands.JailTeleInCommand;
 import com.graywolf336.jail.command.subcommands.JailTeleOutCommand;
@@ -165,22 +179,41 @@ public class JailHandler {
 	}
 	
 	private void loadCommands() {
+		load(JailCellCreateCommand.class);
+		load(JailCheckCommand.class);
+		load(JailClearCommand.class);
+		load(JailClearForceCommand.class);
 		load(JailCommand.class);
+		load(JailCreateCommand.class);
+		load(JailListCellsCommand.class);
 		load(JailListCommand.class);
 		load(JailMuteCommand.class);
 		load(JailReloadCommand.class);
+		load(JailRemoveCellCommand.class);
 		load(JailStopCommand.class);
 		load(JailTeleInCommand.class);
 		load(JailTeleOutCommand.class);
 		load(JailVersionCommand.class);
 		
 		//Puts the commands in the HashMap
+		addCmds.put("cellcreate", new CellCreate());
+		addCmds.put("cc", new CellCreate());
+		addCmds.put("check", new Check());
+		addCmds.put("clear", new Clear());
+		addCmds.put("clearforce", new ClearForce());
+		addCmds.put("cf", new ClearForce());
+		addCmds.put("create", new Create());
 		addCmds.put("list", new JailList());
 		addCmds.put("l", new JailList());
+		addCmds.put("listcells", new ListCells());
+		addCmds.put("lc", new ListCells());
 		addCmds.put("mute", new Mute());
 		addCmds.put("m", new Mute());
 		addCmds.put("reload", new Reload());
 		addCmds.put("r", new Reload());
+		addCmds.put("removecell", new RemoveCell());
+		addCmds.put("rcell", new RemoveCell());
+		addCmds.put("rc", new RemoveCell());
 		addCmds.put("stop", new Stop());
 		addCmds.put("s", new Stop());
 		addCmds.put("telein", new TeleIn());

src/main/java/com/graywolf336/jail/command/jcommands/CellCreate.java

@@ -0,0 +1,13 @@
+package com.graywolf336.jail.command.jcommands;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import com.beust.jcommander.Parameter;
+import com.beust.jcommander.Parameters;
+
+@Parameters(commandDescription = "Starts the creation of cells in the specified jail.")
+public class CellCreate {
+	@Parameter
+	private List<String> parameters = new ArrayList<String>();
+}

src/main/java/com/graywolf336/jail/command/jcommands/Check.java

@@ -0,0 +1,13 @@
+package com.graywolf336.jail.command.jcommands;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import com.beust.jcommander.Parameter;
+import com.beust.jcommander.Parameters;
+
+@Parameters(commandDescription = "Checks if a player is jailed and if so gives the sender information about the jailing.")
+public class Check {
+	@Parameter
+	private List<String> parameters = new ArrayList<String>();
+}

src/main/java/com/graywolf336/jail/command/jcommands/Clear.java

@@ -0,0 +1,13 @@
+package com.graywolf336.jail.command.jcommands;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import com.beust.jcommander.Parameter;
+import com.beust.jcommander.Parameters;
+
+@Parameters(commandDescription = "Unjails all the prisoners from all the jails or the specified jail.")
+public class Clear {
+	@Parameter
+	private List<String> parameters = new ArrayList<String>();
+}

src/main/java/com/graywolf336/jail/command/jcommands/ClearForce.java

@@ -0,0 +1,13 @@
+package com.graywolf336.jail.command.jcommands;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import com.beust.jcommander.Parameter;
+import com.beust.jcommander.Parameters;
+
+@Parameters(commandDescription = "Starts the creation process of creating a jail.")
+public class ClearForce {
+	@Parameter
+	private List<String> parameters = new ArrayList<String>();
+}

src/main/java/com/graywolf336/jail/command/jcommands/Create.java

@@ -0,0 +1,13 @@
+package com.graywolf336.jail.command.jcommands;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import com.beust.jcommander.Parameter;
+import com.beust.jcommander.Parameters;
+
+@Parameters(commandDescription = "Starts the creation process of creating a jail.")
+public class Create {
+	@Parameter
+	private List<String> parameters = new ArrayList<String>();
+}

src/main/java/com/graywolf336/jail/command/jcommands/ListCells.java

@@ -0,0 +1,13 @@
+package com.graywolf336.jail.command.jcommands;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import com.beust.jcommander.Parameter;
+import com.beust.jcommander.Parameters;
+
+@Parameters(commandDescription = "Lists all the cells in a certain jail.")
+public class ListCells {
+	@Parameter
+	private List<String> parameters = new ArrayList<String>();
+}

src/main/java/com/graywolf336/jail/command/jcommands/RemoveCell.java

@@ -0,0 +1,13 @@
+package com.graywolf336.jail.command.jcommands;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import com.beust.jcommander.Parameter;
+import com.beust.jcommander.Parameters;
+
+@Parameters(commandDescription = "Removes the cell from the jail.")
+public class RemoveCell {
+	@Parameter
+	private List<String> parameters = new ArrayList<String>();
+}

src/main/java/com/graywolf336/jail/command/subcommands/JailCellCreateCommand.java

@@ -1,4 +1,4 @@
-package com.graywolf336.jail.command.commands;
+package com.graywolf336.jail.command.subcommands;
 
 import org.bukkit.ChatColor;
 import org.bukkit.command.CommandSender;
@@ -13,21 +13,21 @@ import com.graywolf336.jail.command.CommandInfo;
 		maxArgs = 2,
 		minimumArgs = 1,
 		needsPlayer = true,
-		pattern = "jailcreatecells|jcc",
+		pattern = "createcells|cc",
 		permission = "jail.command.jailcreatecells",
 		usage = "/jail cellcreate [jail] (cellname)"
 	)
-public class CellCreateCommand implements Command {
+public class JailCellCreateCommand implements Command {
 
 	public boolean execute(JailManager jm, CommandSender sender, String... args) {
 		Player player = (Player) sender;
 		String name = player.getName();
-		String jail = args[0].toLowerCase();
+		String jail = args[1].toLowerCase();
 		String cell = "";
 		
 		//Only get the cell name they provide if they provide it
-		if(args.length >= 2) {
+		if(args.length >= 3) {
-			cell = args[1];
+			cell = args[2];
 		}
 		
 		//Check if the player is currently creating something else

src/main/java/com/graywolf336/jail/command/subcommands/JailCheckCommand.java

@@ -1,4 +1,4 @@
-package com.graywolf336.jail.command.commands;
+package com.graywolf336.jail.command.subcommands;
 
 import org.bukkit.command.CommandSender;
 
@@ -11,24 +11,23 @@ import com.graywolf336.jail.enums.LangString;
 		maxArgs = 1,
 		minimumArgs = 0,
 		needsPlayer = false,
-		pattern = "jailcheck|jcheck",
+		pattern = "check",
 		permission = "jail.command.jailcheck",
 		usage = "/jail check (Player name)"
 	)
 public class JailCheckCommand implements Command{
 
 	// Checks the status of the specified prisoner, if no args, will display all players currently jailed
-	
 	public boolean execute(JailManager jm, CommandSender sender, String... args) {
 		//No args means show everyone
-		if(args.length == 0) {
+		if(args.length == 1) {
-			
+			//TODO
 		}else {
 			//Otherwise let's check the first arg
-			if(jm.isPlayerJailed(args[0])) {
+			if(jm.isPlayerJailed(args[1])) {
-				
+				//TODO
 			}else {
-				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOTJAILED, args[0]));
+				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOTJAILED, args[1]));
 			}
 		}
 		

src/main/java/com/graywolf336/jail/command/subcommands/JailClearCommand.java

@@ -1,4 +1,4 @@
-package com.graywolf336.jail.command.commands;
+package com.graywolf336.jail.command.subcommands;
 
 import org.bukkit.command.CommandSender;
 
@@ -13,7 +13,7 @@ import com.graywolf336.jail.enums.LangString;
 		maxArgs = 1,
 		minimumArgs = 0,
 		needsPlayer = false,
-		pattern = "jailclear|jclear",
+		pattern = "clear",
 		permission = "jail.command.jailclear",
 		usage = "/jail clear (Jail name)"
 	)
@@ -21,8 +21,8 @@ public class JailClearCommand implements Command {
 	
 	// If Jail is specified unjails all the prisoners from that Jail (new feature) otherwise it unjails all the prisoners from all the jails
 	public boolean execute(JailManager jm, CommandSender sender, String... args) {
-		if(args.length == 1) {
+		if(args.length == 2) {
-			Jail j = jm.getJail(args[0]);
+			Jail j = jm.getJail(args[1]);
 			
 			if(j != null) {
 				for(Prisoner p : j.getAllPrisoners()) {
@@ -31,7 +31,7 @@ public class JailClearCommand implements Command {
 				
 				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.PRISONERSCLEARED, j.getName()));
 			}else {
-				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOJAIL, args[0]));
+				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOJAIL, args[1]));
 			}
 		}else {
 			if(jm.getJails().size() == 0) {

src/main/java/com/graywolf336/jail/command/subcommands/JailClearForceCommand.java

@@ -1,4 +1,4 @@
-package com.graywolf336.jail.command.commands;
+package com.graywolf336.jail.command.subcommands;
 
 import org.bukkit.command.CommandSender;
 
@@ -12,7 +12,7 @@ import com.graywolf336.jail.enums.LangString;
 		maxArgs = 1,
 		minimumArgs = 0,
 		needsPlayer = false,
-		pattern = "jailclearforce|jcf",
+		pattern = "clearforce|cf",
 		permission = "jail.command.jailclearforce",
 		usage = "/jail clearforce (Jail name)"
 	)
@@ -20,14 +20,14 @@ public class JailClearForceCommand implements Command {
 	
 	// If Jail is specified clear all prisoners from that Jail (new feature) else, clear all players from all jails
 	public boolean execute(JailManager jm, CommandSender sender, String... args) {
-		if(args.length == 1) {
+		if(args.length == 2) {
-			Jail j = jm.getJail(args[0]);
+			Jail j = jm.getJail(args[1]);
 			
 			if(j != null) {
 				j.clearPrisoners();
 				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.PRISONERSCLEARED, j.getName()));
 			}else {
-				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOJAIL, args[0]));
+				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOJAIL, args[1]));
 			}
 		}else {
 			if(jm.getJails().size() == 0) {

src/main/java/com/graywolf336/jail/command/subcommands/JailCreateCommand.java

@@ -1,4 +1,4 @@
-package com.graywolf336.jail.command.commands;
+package com.graywolf336.jail.command.subcommands;
 
 import org.bukkit.ChatColor;
 import org.bukkit.command.CommandSender;
@@ -12,7 +12,7 @@ import com.graywolf336.jail.command.CommandInfo;
 		maxArgs = 1,
 		minimumArgs = 1,
 		needsPlayer = true,
-		pattern = "jailcreate|jc",
+		pattern = "create",
 		permission = "jail.command.jailcreate",
 		usage = "/jail create [name]"
 	)
@@ -21,7 +21,7 @@ public class JailCreateCommand implements Command {
 	public boolean execute(JailManager jm, CommandSender sender, String... args) {
 		Player player = (Player) sender;
 		String name = player.getName();
-		String jail = args[0];
+		String jail = args[1];
 		
 		//Check if the player is currently creating something else
 		if(jm.isCreatingSomething(name)) {

src/main/java/com/graywolf336/jail/command/subcommands/JailListCellsCommand.java

@@ -1,4 +1,4 @@
-package com.graywolf336.jail.command.commands;
+package com.graywolf336.jail.command.subcommands;
 
 import org.bukkit.ChatColor;
 import org.bukkit.command.CommandSender;
@@ -14,7 +14,7 @@ import com.graywolf336.jail.enums.LangString;
 		maxArgs = 1,
 		minimumArgs = 1,
 		needsPlayer = false,
-		pattern = "jaillistcells|jcc",
+		pattern = "listcells|lc",
 		permission = "jail.command.jaillistcell",
 		usage = "/jail listcells <jail>"
 	)
@@ -24,8 +24,8 @@ public class JailListCellsCommand implements Command {
 		sender.sendMessage(ChatColor.AQUA + "----------Cells----------");
 		
 		if(!jm.getJails().isEmpty()) {
-			if(jm.getJail(args[0]) != null) {
+			if(jm.getJail(args[1]) != null) {
-				Jail j = jm.getJail(args[0]);
+				Jail j = jm.getJail(args[1]);
 				
 				String message = "";
 				for(Cell c : j.getCells()) {
@@ -42,7 +42,7 @@ public class JailListCellsCommand implements Command {
 					sender.sendMessage(ChatColor.GREEN + message);
 				}
 			}else {
-				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOJAIL, args[0]));
+				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOJAIL, args[1]));
 			}
 		}else {
 			sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOJAILS));

src/main/java/com/graywolf336/jail/command/subcommands/JailRemoveCellCommand.java

@@ -1,4 +1,4 @@
-package com.graywolf336.jail.command.commands;
+package com.graywolf336.jail.command.subcommands;
 
 import org.bukkit.command.CommandSender;
 
@@ -12,38 +12,36 @@ import com.graywolf336.jail.enums.LangString;
 		maxArgs = 2,
 		minimumArgs = 2,
 		needsPlayer = false,
-		pattern = "jailremovecell|jrcell",
+		pattern = "removecell|rcell|rc",
 		permission = "jail.command.jailremovecell",
 		usage = "/jail removecell [Jail Name] (Cell Name)"
 	)
 public class JailRemoveCellCommand implements Command{
 
 	// Remove the specified Cell from the Specified Jail
-	
 	public boolean execute(JailManager jm, CommandSender sender, String... args) {
-		Jail j = jm.getJail(args[0]);
+		Jail j = jm.getJail(args[1]);
 		
 		if(j != null) {
 			if(!j.getCells().isEmpty()) {
-				if(j.getCell(args[1]) != null) {
+				if(j.getCell(args[2]) != null) {
 					//remove it!
-					j.removeCell(args[1]);
+					j.removeCell(args[2]);
 					sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.CELLREMOVED,
-							new String[] { args[1], args[0] }));
+							new String[] { args[2], args[1] }));
 				}else {
 					//No cell by that name
 					sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOCELL,
-							new String[] { args[1], args[0] }));
+							new String[] { args[2], args[1] }));
 				}
 			}else {
 				//No cells in this jail
-				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOCELLS, args[0]));
+				sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOCELLS, args[1]));
 			}
 		}else {
-			sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOJAIL, args[0]));
+			sender.sendMessage(jm.getPlugin().getJailIO().getLanguageString(LangString.NOJAIL, args[1]));
 		}
 		
 		return true;
 	}
-
 }